LLM Reasoning Framework for Scientific Research
Config is the same across clients — only the file and path differ.
{
"mcpServers": {
"adaptive-graph-of-thoughts": {
"cwd": "/path/to/Adaptive-Graph-of-Thoughts-MCP-server",
"env": {
"NEO4J_URI": "bolt://localhost:7687",
"NEO4J_USER": "neo4j",
"NEO4J_PASSWORD": "your_password",
"MCP_TRANSPORT_TYPE": "stdio"
},
"args": [
"-m",
"adaptive_graph_of_thoughts.main"
],
"command": "python"
}
}
}Are you the author?
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🚀 Next-Generation AI Reasoning Framework for Scientific Research
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🚀 Next-Generation AI Reasoning Framework for Scientific Research
Leveraging graph structures to transform how AI systems approach scientific reasoning
Adaptive Graph of Thoughts (AGoT) is a high-performance MCP server that implements the Advanced Scientific Reasoning Graph-of-Thoughts (ASR-GoT) framework. It uses a Neo4j graph database as a dynamic knowledge store and exposes reasoning capabilities through the Model Context Protocol (MCP), enabling seamless integration with AI assistants like Claude Desktop.
| Feature | Description |
|---|---|
| 🧠 Graph-Based Reasoning | Multi-stage pipeline with 8 specialized reasoning stages |
| 📊 Dynamic Confidence Scoring | Multi-dimensional evaluation with uncertainty quantification |
| 🔬 Evidence Integration | Real-time connection to PubMed, Google Scholar & Exa Search |
| ⚡ High Performance | Async FastAPI with Neo4j graph operations |
| 🔌 MCP Protocol | Native Claude Desktop & VS Code integration |
| 🐳 Cloud-Ready | Full Docker + Kubernetes (Helm) support |
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graph TB
subgraph Clients["🖥️ Client Layer"]
CD["🤖 Claude Desktop"]
VS["💻 VS Code / Cursor"]
CC["🔗 Custom MCP Clients"]
end
subgraph Gateway["🌐 API Gateway Layer"]
MCP_EP["⚡ MCP Endpoint\n/mcp"]
NLQ_EP["🔍 NLQ Endpoint\n/nlq"]
GE_EP["📊 Graph Explorer\n/graph"]
HE["💚 Health Check\n/health"]
end
subgraph Core["🧠 Core Application Layer"]
direction TB
GTP["🔄 GoT Processor\nOrchestrator"]
subgraph Pipeline["ASR-GoT 8-Stage Pipeline"]
S1["1️⃣ Init &\nContext Setup"]
S2["2️⃣ Query\nDecomposition"]
S3["3️⃣ Hypothesis\nGeneration"]
S4["4️⃣ Evidence\nIntegrat
... [View full README on GitHub](https://github.com/SaptaDey/Adaptive-Graph-of-Thoughts-MCP-server#readme)