Agentic Pymol
by Arcadia-Science
A Model Context Protocol (MCP) server that exposes PyMOL as a typed tool surface to your agent (Claude Code/Desktop, Codex, or any MCP-compatible client)
31 GitHub
No known CVEs
MIT license
Actively maintained
Last commit 7d ago
Works with most clients
Transport: stdio
0 tools
Token cost not measured
Step 1
Install in your client
Config is the same across clients — only the file and path differ.
CD
Supported in Claude Desktopstdio · Node 18+
Paste into ~/Library/Application Support/Claude/claude_desktop_config.json
{
"mcpServers": {
"agentic-pymol": {
"command": "<see-readme>",
"args": []
}
}
}Are you the author?
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What Agentic Pymol does
Test This Server
No automated test available for this server. Check the GitHub README for setup instructions.
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Score breakdown
0/100across 5 weighted dimensions
0255075100
−100
Security
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Documentation
Compatibility
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Security
OSV.devNo known CVEs.
No package registry to scan.
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Frequently Asked Questions
- Is Agentic Pymol safe to use?
- Agentic Pymol has no known CVEs as of the latest MCPpedia security scan. It does not require authentication, so any local process can connect — keep this in mind in shared environments. Licensed under MIT.
- How do I install Agentic Pymol?
- Agentic Pymol can be installed by cloning its GitHub repository and following the setup instructions in the README.
- What AI clients work with Agentic Pymol?
- Agentic Pymol is compatible with claude-desktop, cursor, claude-code. It uses stdio transport.
- Is Agentic Pymol actively maintained?
- Agentic Pymol is actively maintained — last commit was 7 days ago. It has 31 GitHub stars.
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