Bioruby MCP Server
by bioruby
10 tools GitHub
No known CVEs
BSD-2-Clause license
Stale
Last commit 375d ago
Works with most clients
Transport: stdio
10 tools · ~443 tok
Grade A · 0.2% of 200K ctx
MCPpedia last refreshed this data
Bioruby MCP Server is an MCP server that provides health tools to AI agents. Its tool list has not been published yet over stdio, requires no API key, and scores 59/100 on MCPpedia's security, maintenance and efficiency rubric.
Step 1
Install in your client
Config is the same across clients - only the file and path differ.
CD
Supported in Claude Desktopstdio · Node 18+
Paste into ~/Library/Application Support/Claude/claude_desktop_config.json
{
"mcpServers": {
"bioruby-kegg": {
"args": [
"bioruby-mcp-server"
],
"command": "wsl.exe"
}
}
}Are you the author?
Add this badge to your README to show your security score and help users find safe servers.
Embed in your READMEAbout badges →
[](https://mcppedia.org/s/bioruby-mcp-server)
Read me
What Bioruby Mcp Server does
A Model Context Protocol (MCP) server that provides access to BioRuby KEGG functionality. This server allows AI assistants to query KEGG databases for biological pathways, compounds, enzymes, and other molecular information through the standardized MCP protocol.
Test This Server
No automated test available for this server. Check the GitHub README for setup instructions.
Scored, not listed
Why this score
Five weighted categories - click any category to see the underlying evidence.
Score breakdown
59/100across 5 weighted dimensions
0255075100
14
20
15
10
−41
Security
Maintenance
Efficiency
Documentation
Compatibility
Categoriesclick a row to see evidence
Security
OSV.devNo known CVEs.
No package registry to scan.
Inventory
Tools (10)
Click any tool to inspect its schema.
~443 tokens total
Community
Reviews
Be the first to review
Have you used this server?
Share your experience - it helps other developers decide.
How easy was setup?Did it work reliably?How was the documentation?
Sign in to write a review.
Frequently Asked Questions
- Is Bioruby Mcp Server safe to use?
- Bioruby Mcp Server has no known CVEs as of the latest MCPpedia security scan. Authentication requirements were not detected automatically - check the project's documentation before connecting in a shared environment. Licensed under BSD-2-Clause.
- How do I install Bioruby Mcp Server?
- Bioruby Mcp Server supports copy-paste install configs on its MCPpedia page for Claude Desktop, Cursor, and Claude Code. Scroll to the Quick Install section and select your client.
- What can Bioruby Mcp Server do?
- Bioruby Mcp Server provides 10 tools: Installation, Usage, Troubleshooting, Development, Testing and 5 more. See the full tools list on the server page for descriptions and parameters.
- What AI clients work with Bioruby Mcp Server?
- Bioruby Mcp Server is compatible with claude-desktop, cursor, claude-code. It uses stdio transport.
- Is Bioruby Mcp Server actively maintained?
- Bioruby Mcp Server is not actively maintained - last commit was 375 days ago.
Related
Similar servers
Others in health / data
Supabase MCP Server96Manage Supabase projects — databases, auth, storage, and edge functions
2.9k 4
Dbhub96Token-efficient database MCP server for PostgreSQL, MySQL, MariaDB, SQL Server, Oracle, SQLite
3.6k 2
Firecrawl Mcp Server95MCP server for Firecrawl — web search, scraping, and biomedical/arXiv paper search.
7.5k 4
Apify Mcp Server95Extract data from any website with thousands of scrapers, crawlers, and automations on Apify Store ⚡
9.0k 1
MCP Security Weekly
Get CVE alerts and security updates for Bioruby Mcp Server and similar servers.
Community
Discussion
Start a conversation
Ask a question, share a tip, or report an issue.
Has anyone used this with Cursor?How do you handle auth?Any alternatives?
Sign in to join the discussion.