Is io.github.berntpopp/genefoundry safe to use?

io.github.berntpopp/genefoundry has no known CVEs as of the latest MCPpedia security scan. It does not require authentication, so any local process can connect — keep this in mind in shared environments.

How do I install io.github.berntpopp/genefoundry?

io.github.berntpopp/genefoundry can be installed by cloning its GitHub repository and following the setup instructions in the README.

What AI clients work with io.github.berntpopp/genefoundry?

io.github.berntpopp/genefoundry is compatible with claude-desktop, cursor, claude-code. It uses stdio transport.

Is io.github.berntpopp/genefoundry actively maintained?

io.github.berntpopp/genefoundry is actively maintained — last commit was 0 days ago. It has 1 GitHub stars.

io.github.berntpopp/genefoundry

MCP gateway federating 21 biomedical MCP servers behind one endpoint: gnomAD, ClinVar, HPO, VEP.

1 GitHub

No known CVEs

No license

Actively maintained

Last commit 0d ago

Works with most clients

Transport:

0 tools

Grade F

MCPpedia last refreshed this data 2h ago

Edit this pageView history

Health

Step 1

Install in your client

Config is the same across clients — only the file and path differ.

Supported in Claude Desktopstdio · Node 18+

Paste into ~/Library/Application Support/Claude/claude_desktop_config.json

{
  "mcpServers": {
    "io-github-berntpopp-genefoundry": {
      "command": "<see-readme>",
      "args": []
    }
  }
}

Are you the author?

Add this badge to your README to show your security score and help users find safe servers.

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[![MCPpedia Score](https://mcppedia.org/api/badge/io-github-berntpopp-genefoundry-berntpopp)](https://mcppedia.org/s/io-github-berntpopp-genefoundry-berntpopp)

Read me

What io.github.berntpopp/genefoundry does

MCP gateway federating 21 biomedical MCP servers behind one endpoint: gnomAD, ClinVar, HPO, VEP.

Test This Server

No automated test available for this server. Check the GitHub README for setup instructions.

Loading README…

Scored, not listed

Why this score

Five weighted categories — click any category to see the underlying evidence.

Score breakdown

10/100across 5 weighted dimensions

How we score →

0255075100

−90

Security

Maintenance

Efficiency

Documentation

Compatibility

Categoriesclick a row to see evidence

Security

OSV.dev

No known CVEs.

No package registry to scan.

Help improve this page

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Frequently Asked Questions

Is io.github.berntpopp/genefoundry safe to use?: io.github.berntpopp/genefoundry has no known CVEs as of the latest MCPpedia security scan. It does not require authentication, so any local process can connect — keep this in mind in shared environments.
How do I install io.github.berntpopp/genefoundry?: io.github.berntpopp/genefoundry can be installed by cloning its GitHub repository and following the setup instructions in the README.
What AI clients work with io.github.berntpopp/genefoundry?: io.github.berntpopp/genefoundry is compatible with claude-desktop, cursor, claude-code. It uses stdio transport.
Is io.github.berntpopp/genefoundry actively maintained?: io.github.berntpopp/genefoundry is actively maintained — last commit was 0 days ago. It has 1 GitHub stars.

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Edit this pageView history

Health

Step 1

Install in your client

Config is the same across clients — only the file and path differ.

Supported in Claude Desktopstdio · Node 18+

Paste into ~/Library/Application Support/Claude/claude_desktop_config.json

{
  "mcpServers": {
    "io-github-berntpopp-genefoundry": {
      "command": "<see-readme>",
      "args": []
    }
  }
}

Are you the author?

Add this badge to your README to show your security score and help users find safe servers.

Embed in your READMEAbout badges →

[![MCPpedia Score](https://mcppedia.org/api/badge/io-github-berntpopp-genefoundry-berntpopp)](https://mcppedia.org/s/io-github-berntpopp-genefoundry-berntpopp)

Read me

What io.github.berntpopp/genefoundry does

MCP gateway federating 21 biomedical MCP servers behind one endpoint: gnomAD, ClinVar, HPO, VEP.

Test This Server

No automated test available for this server. Check the GitHub README for setup instructions.

README

genefoundry-router

A thin FastMCP 3.x aggregator that federates the GeneFoundry *-link MCP fleet behind a single Streamable-HTTP endpoint. A host adds one server — genefoundry — and gets every biomedical backend with collision-free <namespace>_<tool> naming and search-based discovery.

[!IMPORTANT] Research use only. Not clinical decision support. Do not use for diagnosis, treatment, triage, or patient management.

Why

An MCP host that mounted all 21 backends directly would face a wall of several hundred tools — more than a model can reason over, and a guarantee of name collisions. The router collapses that into one endpoint and replaces the flat catalog with a search surface, so a model finds the right tool by intent instead of by scrolling.

It is a client to each backend and a server to hosts: it namespaces and shapes the surface, but never rewrites a backend's data. The caller's token is never forwarded upstream.

Quick start

The fleet is hosted — no install required:

claude mcp add --transport http genefoundry https://genefoundry.org/mcp

Health check: genefoundry.org/health.

To run your own against the live fleet (Python 3.12+, uv):

uv sync --group dev
cp .env.example .env                    # set GF_*_URL backend URLs and GF_AUTH_MODE
uv run genefoundry-router run --host 127.0.0.1 --port 8000
curl -s localhost:8000/health | python -m json.tool

An offline fake fleet (make dev-fleet + make run-dev, or one-shot make test-e2e) runs the real router against impersonated backends over real Streamable-HTTP — no Docker, no network.

Tools

The router does not surface the federated catalog flat. A model sees three things:

Tool	Purpose
`search_tools`	Relevance search over the entire federated catalog
`call_tool`	Invoke a hit by its `<namespace>_<tool>` name
pinned entry points	Each backend's front-door tool, always visible — declared per-backend as `entrypoints:` in `servers.yaml`

search_tools(query="splicing prediction")   # → spliceai_predict_splicing (+ schema)
call_tool(name="spliceai_predict_splicing", arguments={...})

Pinning makes each domain's canonical tool reachable deterministically rather than by relevance luck. See How discovery works — including the two traps that bite MCP clients.

Federated backends

21 backends, 272 tools, each surfaced namespaced — e.g. gnomad_search_genes.

Namespace	Domain	Data source	Tools	Repo
`pubtator`	Literature & entity annotation	PubTator3	35	pubtator-link
`gnomad`	Variant / gene / population frequency	gnomAD	22	gnomad-link
`orphanet`	Rare disease ontology & associations	Orphadata	19	orphanet-link
`clingen`	Gene–disease curation	ClinGen	17	clingen-link
`hpo`	Phenotype ontology & associations	[Human Phenotype Ontol

... View full README on GitHub

Loading README…

Scored, not listed

Why this score

Five weighted categories — click any category to see the underlying evidence.

Score breakdown

10/100across 5 weighted dimensions

How we score →

0255075100

−90

Security

Maintenance

Efficiency

Documentation

Compatibility

Categoriesclick a row to see evidence

Security

OSV.dev

No known CVEs.

No package registry to scan.

Help improve this page

This server is missing a description. Tools and install config are also missing.If you've used it, help the community.

Add information

Community

Reviews

Be the first to review

Have you used this server?

Share your experience — it helps other developers decide.

How easy was setup?Did it work reliably?How was the documentation?

Frequently Asked Questions

Is io.github.berntpopp/genefoundry safe to use?: io.github.berntpopp/genefoundry has no known CVEs as of the latest MCPpedia security scan. It does not require authentication, so any local process can connect — keep this in mind in shared environments.
How do I install io.github.berntpopp/genefoundry?: io.github.berntpopp/genefoundry can be installed by cloning its GitHub repository and following the setup instructions in the README.
What AI clients work with io.github.berntpopp/genefoundry?: io.github.berntpopp/genefoundry is compatible with claude-desktop, cursor, claude-code. It uses stdio transport.
Is io.github.berntpopp/genefoundry actively maintained?: io.github.berntpopp/genefoundry is actively maintained — last commit was 0 days ago. It has 1 GitHub stars.