Elnora MCP Server

Connect AI agents to the Elnora bioprotocol optimization platform via the Model Context Protocol.

What is Elnora?

Elnora is an AI-powered platform that helps researchers generate, optimize, and manage bioprotocols for wet-lab experiments. With this MCP server, you can interact with Elnora directly from AI coding assistants like Claude Code, Cursor, VS Code, Codex, and ChatGPT.

Quick Start

Add the Elnora MCP server to your AI client. No installation required — just point to the remote URL.

Claude Code

claude mcp add elnora --transport http --scope user https://mcp.elnora.ai/mcp

Installation scopes:

Scope	Flag	Where it's stored	Best for
User	--scope user	~/.claude.json	Available in all your projects (recommended)
Local	--scope local	Current project config	Single-project use (default if omitted)
Project	--scope project	.mcp.json in project root	Team sharing via version control

Cursor

Add to your Cursor MCP settings (Settings > MCP Servers):

{
  "mcpServers": {
    "elnora": {
      "url": "https://mcp.elnora.ai/mcp"
    }
  }
}

VS Code (Copilot)

Add to your .vscode/mcp.json:

{
  "servers": {
    "elnora": {
      "type": "http",
      "url": "https://mcp.elnora.ai/mcp"
    }
  }
}

Codex

codex --mcp-config mcp.json

With mcp.json:

{
  "mcpServers": {
    "elnora": {
      "url": "https://mcp.elnora.ai/mcp"
    }
  }
}

ChatGPT

Add as a remote MCP server in ChatGPT settings using the URL https://mcp.elnora.ai/mcp.

---

On first connection, a browser window will open for OAuth login. Subsequent requests use the issued token automatically.

Authentication

OAuth 2.1 (Recommended)

Most MCP clients handle OAuth automatically. On first connection:

1. A browser window opens for login
2. You authenticate with your Elnora account
3. The client receives a token and uses it for subsequent requests

No manual configuration needed.

API Key

Create an API key in your Elnora dashboard and pass it via the X-API-Key header:

{
  "mcpServers": {
    "elnora": {
      "url": "https://mcp.elnora.ai/mcp",
      "headers": {
        "X-API-Key": "YOUR_API_KEY"
      }
    }
  }
}

Security best practices:

• Never commit API keys to version control
• Use environment variables or a secrets manager
• Rotate keys periodically via the Elnora dashboard
• Use OAuth when possible — it handles token refresh automatically

Capabilities

74 tools across 15 categories. All tools are discoverable through your MCP client's tool listing.

Category	Tools	What you can do
Protocols	1	Generate optimized bioprotocols from natural language descriptions
Tasks	6	Create conversation threads, send messages, get AI responses
Messages	1	Chat with Elnora's AI within a task context
Files	18	Upload, download, version, fork, and manage protocol files
Projects	10	Create projects and manage team membership
Organizations	13	Org settings, billing, member invitations
Folders	5	Organize files into nested folder structures
Library	5	Access the organization's shared protocol library
Search	3	Full-text search across tasks, files, and all resources
API Keys	3	Create and manage personal API keys
Audit	1	Query organization audit logs
Account	4	Manage user profile and agreements
Feedback	1	Submit platform feedback
Feature Flags	2	Check feature availability
Health	1	Verify API connectivity

Examples

Generate a bioprotocol

"Use Elnora to generate a HEK 293 cell maintenance protocol"

The assi

... View full README on GitHub