Is io.github.OMOPHub/omophub-mcp safe to use?

io.github.OMOPHub/omophub-mcp has no known CVEs as of the latest MCPpedia security scan. It does not require authentication, so any local process can connect — keep this in mind in shared environments.

How do I install io.github.OMOPHub/omophub-mcp?

io.github.OMOPHub/omophub-mcp supports copy-paste install configs on its MCPpedia page for Claude Desktop, Cursor, and Claude Code. Scroll to the Quick Install section and select your client.

What can io.github.OMOPHub/omophub-mcp do?

io.github.OMOPHub/omophub-mcp provides 11 tools: search_concepts, get_concept, get_concept_by_code, map_concept, get_hierarchy and 6 more. See the full tools list on the server page for descriptions and parameters.

What AI clients work with io.github.OMOPHub/omophub-mcp?

io.github.OMOPHub/omophub-mcp is compatible with claude-desktop, cursor, claude-code. It uses stdio and sse and http transport.

Is io.github.OMOPHub/omophub-mcp actively maintained?

io.github.OMOPHub/omophub-mcp is actively maintained — last commit was 4 days ago. It has 2 GitHub stars.

io.github.OMOPHub/omophub-mcp

@omophub/omophub-mcp

Search, lookup, map, and navigate OMOP medical vocabularies via AI agents

2 183/wk 11 tools GitHub npm

No known CVEs

No license

Actively maintained

Last commit 4d ago

Works with most clients

Transport: stdio, sse, http

11 tools · ~563 tok

Grade B · 0.3% of 200K ctx

Edit this pageView history

Health Data

Step 1

Install in your client

Config is the same across clients — only the file and path differ.

Supported in Claude Desktopstdio, sse, http · Node 18+

Paste into ~/Library/Application Support/Claude/claude_desktop_config.json

{
  "mcpServers": {
    "omophub": {
      "env": {
        "OMOPHUB_API_KEY": "oh_your_key_here"
      },
      "args": [
        "-y",
        "@omophub/omophub-mcp"
      ],
      "command": "npx"
    }
  }
}

Are you the author?

Add this badge to your README to show your security score and help users find safe servers.

Embed in your READMEAbout badges →

[![MCPpedia Score](https://mcppedia.org/api/badge/io-github-omophub-omophub-mcp)](https://mcppedia.org/s/io-github-omophub-omophub-mcp)

Read me

What io.github.OMOPHub/omophub-mcp does

Search, map, and navigate 10M+ OMOP concepts: SNOMED CT, ICD-10, RxNorm, LOINC, and more. Directly from Claude, Cursor, VS Code, or any MCP-compatible client.

Test This Server

Run this in your terminal to verify the server starts. Then let us know if it worked — your result helps other developers.

npx -y '@omophub/omophub-mcp' 2>&1 | head -1 && echo "✓ Server started successfully"

After testing, let us know if it worked:

Loading README…

Scored, not listed

Why this score

Five weighted categories — click any category to see the underlying evidence.

Score breakdown

85/100across 5 weighted dimensions

How we score →

0255075100

−15

Security

Maintenance

Efficiency

Documentation

Compatibility

Categoriesclick a row to see evidence

Security

OSV.dev

No known CVEs.

Checked @omophub/omophub-mcp against OSV.dev.

Inventory

Tools (11)

Click any tool to inspect its schema.

~563 tokens total

Inventory

Resources (2)

vocabularies

Full vocabulary catalog with statistics

omophub://vocabularies

vocabulary_details

Details for a specific vocabulary

omophub://vocabularies/{vocabulary_id}

Inventory

Prompts (2)

phenotype-concept-set

Guided workflow to build a concept set for a clinical phenotype

code-lookup

Look up and validate a medical code with mappings and hierarchy

Community

Reviews

Be the first to review

Have you used this server?

Share your experience — it helps other developers decide.

How easy was setup?Did it work reliably?How was the documentation?

Frequently Asked Questions

Is io.github.OMOPHub/omophub-mcp safe to use?: io.github.OMOPHub/omophub-mcp has no known CVEs as of the latest MCPpedia security scan. It does not require authentication, so any local process can connect — keep this in mind in shared environments.
How do I install io.github.OMOPHub/omophub-mcp?: io.github.OMOPHub/omophub-mcp supports copy-paste install configs on its MCPpedia page for Claude Desktop, Cursor, and Claude Code. Scroll to the Quick Install section and select your client.
What can io.github.OMOPHub/omophub-mcp do?: io.github.OMOPHub/omophub-mcp provides 11 tools: search_concepts, get_concept, get_concept_by_code, map_concept, get_hierarchy and 6 more. See the full tools list on the server page for descriptions and parameters.
What AI clients work with io.github.OMOPHub/omophub-mcp?: io.github.OMOPHub/omophub-mcp is compatible with claude-desktop, cursor, claude-code. It uses stdio and sse and http transport.
Is io.github.OMOPHub/omophub-mcp actively maintained?: io.github.OMOPHub/omophub-mcp is actively maintained — last commit was 4 days ago. It has 2 GitHub stars.

Similar servers

Others in health / data

View all →

PostgreSQL MCP Server98

Query and manage PostgreSQL databases directly from AI assistants

86.4k 1

Firecrawl Mcp Server95

🔥 Official Firecrawl MCP Server - Adds powerful web scraping and search to Cursor, Claude and any other LLM clients.

6.4k 4

Supabase MCP Server95

Manage Supabase projects — databases, auth, storage, and edge functions

2.7k 4

Alpha Vantage Mcp95

Real-time financial market data: stocks, forex, crypto, commodities, and economic indicators

158 3

MCP Security Weekly

Get CVE alerts and security updates for io.github.OMOPHub/omophub-mcp and similar servers.

Community

Discussion

Start a conversation

Ask a question, share a tip, or report an issue.

Has anyone used this with Cursor?How do you handle auth?Any alternatives?

Edit this pageView history

Health Data

Step 1

Install in your client

Config is the same across clients — only the file and path differ.

Supported in Claude Desktopstdio, sse, http · Node 18+

Paste into ~/Library/Application Support/Claude/claude_desktop_config.json

{
  "mcpServers": {
    "omophub": {
      "env": {
        "OMOPHUB_API_KEY": "oh_your_key_here"
      },
      "args": [
        "-y",
        "@omophub/omophub-mcp"
      ],
      "command": "npx"
    }
  }
}

Are you the author?

Add this badge to your README to show your security score and help users find safe servers.

Embed in your READMEAbout badges →

[![MCPpedia Score](https://mcppedia.org/api/badge/io-github-omophub-omophub-mcp)](https://mcppedia.org/s/io-github-omophub-omophub-mcp)

Read me

What io.github.OMOPHub/omophub-mcp does

Search, map, and navigate 10M+ OMOP concepts: SNOMED CT, ICD-10, RxNorm, LOINC, and more. Directly from Claude, Cursor, VS Code, or any MCP-compatible client.

Test This Server

Run this in your terminal to verify the server starts. Then let us know if it worked — your result helps other developers.

npx -y '@omophub/omophub-mcp' 2>&1 | head -1 && echo "✓ Server started successfully"

After testing, let us know if it worked:

README

OMOPHub MCP Server

Medical vocabularies for AI agents.
Search, map, and navigate 10M+ OMOP concepts: SNOMED CT, ICD-10, RxNorm, LOINC, and more. Directly from Claude, Cursor, VS Code, or any MCP-compatible client.

Quick Start · Tools · Examples · Docs · Website

Why OMOPHub MCP?

Working with medical vocabularies today means downloading multi-gigabyte CSV files, loading them into a local database, and writing SQL to find what you need. Every time.

OMOPHub MCP Server gives your AI assistant instant access to the entire OHDSI ATHENA vocabulary. No database setup, no CSV wrangling, no context switching. Just ask.

You: "Map ICD-10 code E11.9 to SNOMED"

Claude: Found it - E11.9 (Type 2 diabetes mellitus without complications)
        maps to SNOMED concept 201826 (Type 2 diabetes mellitus)
        via standard 'Maps to' relationship.

Use cases:

Concept lookup - Find OMOP concept IDs for clinical terms in seconds
Cross-vocabulary mapping - Map between ICD-10, SNOMED, RxNorm, LOINC, and 100+ vocabularies
Hierarchy navigation - Explore ancestors and descendants for phenotype definitions
Concept set building - Let your AI agent assemble complete concept sets for cohort definitions
Code validation - Verify medical codes and check their standard mappings

Quick Start

1. Get an API Key

2. Add to Your AI Client

Claude Desktop

Open Claude Desktop settings > "Developer" tab > "Edit Config". Add to claude_desktop_config.json:

{
  "mcpServers": {
    "omophub": {
      "command": "npx",
      "args": ["-y", "@omophub/omophub-mcp"],
      "env": {
        "OMOPHUB_API_KEY": "oh_your_key_here"
      }
    }
  }
}

Claude Code

claude mcp add omophub -- npx -y @omophub/omophub-mcp
# Then set OMOPHUB_API_KEY in your environment

Cursor

Open the command palette and choose "Cursor Settings" > "MCP" > "Add new global MCP server". Add to .cursor/mcp.json:

{
  "mcpServers": {
    "omophub": {
      "command": "npx",
      "args": ["-y", "@omophub/omophub-mcp"],
      "env": {
        "OMOPHUB_API_KEY": "oh_your_key_here"
      }
    }
  }
}

VS Code

Add to .vscode/mcp.json:

{
  "servers": {
    "omophub": {
      "command": "npx",
      "args": ["-y", "@omophub/omophub-mcp"],
      "env": {
        "OMOPHUB_API_KEY": "oh_your_key_here"
      }
    }
  }
}

Streamable HTTP (Remote / Hosted)

Run the MCP server as a

... View full README on GitHub

Loading README…

Scored, not listed

Why this score

Five weighted categories — click any category to see the underlying evidence.

Score breakdown

85/100across 5 weighted dimensions

How we score →

0255075100

−15

Security

Maintenance

Efficiency

Documentation

Compatibility

Categoriesclick a row to see evidence

Security

OSV.dev

No known CVEs.

Checked @omophub/omophub-mcp against OSV.dev.

Inventory

Tools (11)

Click any tool to inspect its schema.

~563 tokens total

Inventory

Resources (2)

vocabularies

Full vocabulary catalog with statistics

omophub://vocabularies

vocabulary_details

Details for a specific vocabulary

omophub://vocabularies/{vocabulary_id}

Inventory

Prompts (2)

phenotype-concept-set

Guided workflow to build a concept set for a clinical phenotype

code-lookup

Look up and validate a medical code with mappings and hierarchy

Community

Reviews

Be the first to review

Have you used this server?

Share your experience — it helps other developers decide.

How easy was setup?Did it work reliably?How was the documentation?

Frequently Asked Questions

Is io.github.OMOPHub/omophub-mcp safe to use?: io.github.OMOPHub/omophub-mcp has no known CVEs as of the latest MCPpedia security scan. It does not require authentication, so any local process can connect — keep this in mind in shared environments.
How do I install io.github.OMOPHub/omophub-mcp?: io.github.OMOPHub/omophub-mcp supports copy-paste install configs on its MCPpedia page for Claude Desktop, Cursor, and Claude Code. Scroll to the Quick Install section and select your client.
What can io.github.OMOPHub/omophub-mcp do?: io.github.OMOPHub/omophub-mcp provides 11 tools: search_concepts, get_concept, get_concept_by_code, map_concept, get_hierarchy and 6 more. See the full tools list on the server page for descriptions and parameters.
What AI clients work with io.github.OMOPHub/omophub-mcp?: io.github.OMOPHub/omophub-mcp is compatible with claude-desktop, cursor, claude-code. It uses stdio and sse and http transport.
Is io.github.OMOPHub/omophub-mcp actively maintained?: io.github.OMOPHub/omophub-mcp is actively maintained — last commit was 4 days ago. It has 2 GitHub stars.