io.github.pipeworx-io/gnomad

Broad Institute gnomAD genomic variant database (GraphQL)

GitHub

No known CVEs

No license

Actively maintained

Last commit 25d ago

Works with most clients

Transport:

0 tools

Grade F

Edit this pageView history

Data Health

Step 1

Install in your client

Config is the same across clients — only the file and path differ.

Supported in Claude Desktopstdio · Node 18+

Paste into ~/Library/Application Support/Claude/claude_desktop_config.json

{
  "mcpServers": {
    "gnomad": {
      "url": "https://gateway.pipeworx.io/gnomad/mcp"
    }
  }
}

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Read me

What io.github.pipeworx-io/gnomad does

Broad Institute gnomAD genomic variant database (GraphQL)

Test This Server

No automated test available for this server. Check the GitHub README for setup instructions.

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Why this score

Five weighted categories — click any category to see the underlying evidence.

Score breakdown

30/100across 5 weighted dimensions

How we score →

0255075100

−70

Security

Maintenance

Efficiency

Documentation

Compatibility

Categoriesclick a row to see evidence

Security

OSV.dev

No known CVEs.

No package registry to scan.

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Frequently Asked Questions

Is io.github.pipeworx-io/gnomad safe to use?: io.github.pipeworx-io/gnomad has no known CVEs as of the latest MCPpedia security scan. It does not require authentication, so any local process can connect — keep this in mind in shared environments.
How do I install io.github.pipeworx-io/gnomad?: io.github.pipeworx-io/gnomad supports copy-paste install configs on its MCPpedia page for Claude Desktop, Cursor, and Claude Code. Scroll to the Quick Install section and select your client.
What AI clients work with io.github.pipeworx-io/gnomad?: io.github.pipeworx-io/gnomad is compatible with claude-desktop, cursor, claude-code. It uses stdio transport.
Is io.github.pipeworx-io/gnomad actively maintained?: io.github.pipeworx-io/gnomad is actively maintained — last commit was 25 days ago.

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Community

Discussion

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Has anyone used this with Cursor?How do you handle auth?Any alternatives?

Tool

Description

variant

Variant by chr-pos-ref-alt (e.g. "1-55051215-G-A") or rsid.

gene

Gene info + variants. Accepts gene symbol (e.g. "BRCA1") or Ensembl gene id.

region

Variants in a genomic region (≤25kb recommended).

transcript

Transcript + variants.

search

Gene / variant search (autocomplete).

Quick Start

Add to your MCP client (Claude Desktop, Cursor, Windsurf, etc.):

{ "mcpServers": { "gnomad": { "url": "https://gateway.pipeworx.io/gnomad/mcp" } } }

Or connect to the full Pipeworx gateway for access to all 673+ data sources:

{ "mcpServers": { "pipeworx": { "url": "https://gateway.pipeworx.io/mcp" } } }

Frequently Asked Questions

Is io.github.pipeworx-io/gnomad safe to use?

io.github.pipeworx-io/gnomad has no known CVEs as of the latest MCPpedia security scan. It does not require authentication, so any local process can connect — keep this in mind in shared environments.

How do I install io.github.pipeworx-io/gnomad?

io.github.pipeworx-io/gnomad supports copy-paste install configs on its MCPpedia page for Claude Desktop, Cursor, and Claude Code. Scroll to the Quick Install section and select your client.

What AI clients work with io.github.pipeworx-io/gnomad?

io.github.pipeworx-io/gnomad is compatible with claude-desktop, cursor, claude-code. It uses stdio transport.

Is io.github.pipeworx-io/gnomad actively maintained?

io.github.pipeworx-io/gnomad is actively maintained — last commit was 25 days ago.

mcp-gnomad

gnomAD MCP — Broad Institute Genome Aggregation Database (GraphQL).

Part of Pipeworx — an MCP gateway connecting AI agents to 673+ live data sources.

Tools

Tool	Description
`variant`	Variant by chr-pos-ref-alt (e.g. "1-55051215-G-A") or rsid.
`gene`	Gene info + variants. Accepts gene symbol (e.g. "BRCA1") or Ensembl gene id.
`region`	Variants in a genomic region (≤25kb recommended).
`transcript`	Transcript + variants.
`search`	Gene / variant search (autocomplete).

Quick Start

Add to your MCP client (Claude Desktop, Cursor, Windsurf, etc.):

{
  "mcpServers": {
    "gnomad": {
      "url": "https://gateway.pipeworx.io/gnomad/mcp"
    }
  }
}

Or connect to the full Pipeworx gateway for access to all 673+ data sources:

{
  "mcpServers": {
    "pipeworx": {
      "url": "https://gateway.pipeworx.io/mcp"
    }
  }
}

Using with ask_pipeworx

Instead of calling tools directly, you can ask questions in plain English:

ask_pipeworx({ question: "your question about Gnomad data" })

The gateway picks the right tool and fills the arguments automatically.

License

MIT

io.github.pipeworx-io/gnomad

Install in your client

What io.github.pipeworx-io/gnomad does

Test This Server

Why this score

30/100across 5 weighted dimensions

Security

Reviews

Frequently Asked Questions

Similar servers

Discussion

io.github.pipeworx-io/gnomad

Install in your client

What io.github.pipeworx-io/gnomad does

Test This Server

mcp-gnomad

Tools

Quick Start

Using with ask_pipeworx

More

License

Why this score

30/100across 5 weighted dimensions

Security

Reviews

Frequently Asked Questions

Similar servers

Discussion

mcp-gnomad

Tools

Quick Start

Using with ask_pipeworx

More

License