Broad Institute gnomAD genomic variant database (GraphQL)
Config is the same across clients — only the file and path differ.
{
"mcpServers": {
"io-github-pipeworx-io-gnomad": {
"command": "<see-readme>",
"args": []
}
}
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Broad Institute gnomAD genomic variant database (GraphQL)
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Broad Institute gnomAD genomic variant database (GraphQL)
Part of Pipeworx — an MCP gateway connecting AI agents to 250+ live data sources.
| Tool | Description |
|---|---|
variant | Variant by chr-pos-ref-alt (e.g. "1-55051215-G-A") or rsid. |
gene | Gene info + variants. Accepts gene symbol (e.g. "BRCA1") or Ensembl gene id. |
region | Variants in a genomic region (≤25kb recommended). |
transcript | Transcript + variants. |
search | Gene / variant search (autocomplete). |
Add to your MCP client (Claude Desktop, Cursor, Windsurf, etc.):
{
"mcpServers": {
"gnomad": {
"url": "https://gateway.pipeworx.io/gnomad/mcp"
}
}
}
Or connect to the full Pipeworx gateway for access to all 250+ data sources:
{
"mcpServers": {
"pipeworx": {
"url": "https://gateway.pipeworx.io/mcp"
}
}
}
Instead of calling tools directly, you can ask questions in plain English:
ask_pipeworx({ question: "your question about Gnomad data" })
The gateway picks the right tool and fills the arguments automatically.
MIT