Plumed2 MCP Server

Name: Plumed2 MCP Server
Author: PhelanShao

by PhelanShao

PLUMED2 Smart Input Generator - An MCP-based assistant for molecular dynamics enhanced sampling configurations that automatically generates optimized PLUMED input files, supporting metadynamics, umbrella sampling, and other enhanced sampling methods with built-in syntax validation and performance optimization.

12 4 tools GitHub

No known CVEs

GPL-3.0 license

Stale

Last commit 483d ago

Works with most clients

Transport: stdio

4 tools · ~553 tok

Grade B · 0.3% of 200K ctx

MCPpedia last refreshed this data 1d ago

Edit this pageView history

Plumed2 MCP Server is an MCP server that PLUMED2 Smart Input Generator - An MCP-based assistant for molecular dynamics enhanced sampling configurations that automatically generates optimized PLUMED input files, supporting metadynamics, umbrella sampling, and other enhanced sampling methods with built-in syntax validation and performance optimization. Its tool list has not been published yet over stdio, requires no API key, and scores 59/100 on MCPpedia's security, maintenance and efficiency rubric.

Developer Tools

Step 1

Install in your client

Config is the same across clients - only the file and path differ.

Supported in Claude Desktopstdio · Node 18+

Paste into ~/Library/Application Support/Claude/claude_desktop_config.json

{
  "mcpServers": {
    "plumed2": {
      "cwd": "/path/to/plumed_mcp_server",
      "args": [
        "-m",
        "plumed_mcp_server.main"
      ],
      "command": "python",
      "alwaysAllow": [
        "generate_plumed_input",
        "validate_plumed_syntax",
        "optimize_plumed_performance",
        "get_plumed_template"
      ]
    }
  }
}

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What Plumed2 Mcp Server does

The PLUMED2 MCP Server is a Model Context Protocol (MCP) server that provides AI assistants with powerful tools for generating, validating, and optimizing PLUMED input files for molecular dynamics simulations. This server enables seamless integration of PLUMED expertise into AI workflows.

Test This Server

No automated test available for this server. Check the GitHub README for setup instructions.

Scored, not listed

Why this score

Five weighted categories - click any category to see the underlying evidence.

Score breakdown

59/100across 5 weighted dimensions

How we score →

0255075100

−41

Security

Maintenance

Efficiency

Documentation

Compatibility

Categoriesclick a row to see evidence

Security

OSV.dev

No known CVEs.

No package registry to scan.

Inventory

Tools (4)

Click any tool to inspect its schema.

~553 tokens total

Community

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Frequently Asked Questions

Is Plumed2 Mcp Server safe to use?: Plumed2 Mcp Server has no known CVEs as of the latest MCPpedia security scan. Authentication requirements were not detected automatically - check the project's documentation before connecting in a shared environment. Licensed under GPL-3.0.
How do I install Plumed2 Mcp Server?: Plumed2 Mcp Server supports copy-paste install configs on its MCPpedia page for Claude Desktop, Cursor, and Claude Code. Scroll to the Quick Install section and select your client.
What can Plumed2 Mcp Server do?: Plumed2 Mcp Server provides 4 tools: generate_plumed_input, validate_plumed_syntax, optimize_plumed_performance, get_plumed_template. See the full tools list on the server page for descriptions and parameters.
What AI clients work with Plumed2 Mcp Server?: Plumed2 Mcp Server is compatible with claude-desktop, cursor, claude-code. It uses stdio transport.
Is Plumed2 Mcp Server actively maintained?: Plumed2 Mcp Server is not actively maintained - last commit was 483 days ago. It has 12 GitHub stars.

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Community

Discussion

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Has anyone used this with Cursor?How do you handle auth?Any alternatives?

{ "mcpServers": { "plumed2": { "cwd": "/path/to/plumed_mcp_server", "args": [ "-m", "plumed_mcp_server.main" ], "command": "python", "alwaysAllow": [ "generate_plumed_input", "validate_plumed_syntax", "optimize_plumed_performance", "get_plumed_template" ] } } }

Frequently Asked Questions

Is Plumed2 Mcp Server safe to use?

Plumed2 Mcp Server has no known CVEs as of the latest MCPpedia security scan. Authentication requirements were not detected automatically - check the project's documentation before connecting in a shared environment. Licensed under GPL-3.0.

How do I install Plumed2 Mcp Server?

Plumed2 Mcp Server supports copy-paste install configs on its MCPpedia page for Claude Desktop, Cursor, and Claude Code. Scroll to the Quick Install section and select your client.

What can Plumed2 Mcp Server do?

Plumed2 Mcp Server provides 4 tools: generate_plumed_input, validate_plumed_syntax, optimize_plumed_performance, get_plumed_template. See the full tools list on the server page for descriptions and parameters.

What AI clients work with Plumed2 Mcp Server?

Plumed2 Mcp Server is compatible with claude-desktop, cursor, claude-code. It uses stdio transport.

Is Plumed2 Mcp Server actively maintained?

Plumed2 Mcp Server is not actively maintained - last commit was 483 days ago. It has 12 GitHub stars.