Precision Medicine Mcp

Name: Precision Medicine Mcp
Author: lynnlangit

by lynnlangit

Precision Medicine MCP Platform: A set of bioinformatics servers + tools - production multiomics/genomics + spatial transcriptomics. Example and demo for ovarian cancer

19 GitHub

No known CVEs

Apache-2.0 license

Actively maintained

Last commit 23d ago

Works with most clients

Transport: sse, http

0 tools

Grade F

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Health Data

Step 1

Install in your client

Config is the same across clients — only the file and path differ.

Supported in Claude Desktopsse, http · Node 18+

Paste into ~/Library/Application Support/Claude/claude_desktop_config.json

{
  "mcpServers": {
    "precision-medicine-mcp": {
      "command": "<see-readme>",
      "args": []
    }
  }
}

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[![MCPpedia Score](https://mcppedia.org/api/badge/precision-medicine-mcp)](https://mcppedia.org/s/precision-medicine-mcp)

Read me

What Precision Medicine Mcp does

Dedicated to PatientOne -- a dear friend who passed from High-Grade Serous Ovarian Carcinoma in 2025.

Test This Server

No automated test available for this server. Check the GitHub README for setup instructions.

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Scored, not listed

Why this score

Five weighted categories — click any category to see the underlying evidence.

Score breakdown

31/100across 5 weighted dimensions

How we score →

0255075100

−69

Security

Maintenance

Efficiency

Documentation

Compatibility

Categoriesclick a row to see evidence

Security

OSV.dev

No known CVEs.

No package registry to scan.

Community

Reviews

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How easy was setup?Did it work reliably?How was the documentation?

Frequently Asked Questions

Is Precision Medicine Mcp safe to use?: Precision Medicine Mcp has no known CVEs as of the latest MCPpedia security scan. It does not require authentication, so any local process can connect — keep this in mind in shared environments. Licensed under Apache-2.0.
How do I install Precision Medicine Mcp?: Precision Medicine Mcp can be installed by cloning its GitHub repository and following the setup instructions in the README.
What AI clients work with Precision Medicine Mcp?: Precision Medicine Mcp is compatible with claude-desktop, cursor, claude-code. It uses sse and http transport.
Is Precision Medicine Mcp actively maintained?: Precision Medicine Mcp is actively maintained — last commit was 23 days ago. It has 19 GitHub stars.

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Community

Discussion

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Has anyone used this with Cursor?How do you handle auth?Any alternatives?

The Problem

Standard oncology workup (BRCA1/2, HRD panel, tumor genomic panel) generates no immunotherapy or investigational hypotheses. For preventive health, standard lipid panels and population genetic screens miss key risk factors. Manual multi-modal analysis across genomics, spatial transcriptomics, and clinical data is clinically impractical -- the platform automates it.

Architecture at a glance

All tools accessible via natural language. Every AI result requires clinician APPROVE/REVISE/REJECT. HIPAA-compliant. 11 servers return per-tool XAI metadata (confidence levels, evidence grades, counterfactuals). Current server and tool counts: Server Registry.

The Results

The platform surfaces clinically actionable findings that standard workup cannot reach — 6 investigational hypotheses across 2 cancer types plus 3 preventive health evidence gaps, validated across three independent use cases:

Use Case	Patient	Key Finding Missed by Standard Workup
HGSOC (Stage IV)	PAT001	3 investigational paths: neoantigen vaccine (RMPEAAPPV IC50 7.8 nM), NNMT/CAF inhibition, convergent checkpoint blockade
ER+ Breast Cancer	PAT002	3 investigational hypotheses: inavolisib over alpelisib (PIK3CA H1047R, 2024 FDA approval), MYC-driven triple therapy, YSAPLSSSL neoepitope vaccine + CAF depletion + anti-PD-1 — zero disease-specific code c

Use Case

Patient

Key Finding Missed by Standard Workup

HGSOC (Stage IV)

PAT001

3 investigational paths: neoantigen vaccine (RMPEAAPPV IC50 7.8 nM), NNMT/CAF inhibition, convergent checkpoint blockade

ER+ Breast Cancer

PAT002

3 investigational hypotheses: inavolisib over alpelisib (PIK3CA H1047R, 2024 FDA approval), MYC-driven triple therapy, YSAPLSSSL neoepitope vaccine + CAF depletion + anti-PD-1 — zero disease-specific code c

Frequently Asked Questions

Is Precision Medicine Mcp safe to use?

Precision Medicine Mcp has no known CVEs as of the latest MCPpedia security scan. It does not require authentication, so any local process can connect — keep this in mind in shared environments. Licensed under Apache-2.0.

How do I install Precision Medicine Mcp?

Precision Medicine Mcp can be installed by cloning its GitHub repository and following the setup instructions in the README.

What AI clients work with Precision Medicine Mcp?

Precision Medicine Mcp is compatible with claude-desktop, cursor, claude-code. It uses sse and http transport.

Is Precision Medicine Mcp actively maintained?

Precision Medicine Mcp is actively maintained — last commit was 23 days ago. It has 19 GitHub stars.

The Problem

Architecture at a glance

The Results

Use Case	Patient	Key Finding Missed by Standard Workup
HGSOC (Stage IV)	PAT001	3 investigational paths: neoantigen vaccine (RMPEAAPPV IC50 7.8 nM), NNMT/CAF inhibition, convergent checkpoint blockade
ER+ Breast Cancer	PAT002	3 investigational hypotheses: inavolisib over alpelisib (PIK3CA H1047R, 2024 FDA approval), MYC-driven triple therapy, YSAPLSSSL neoepitope vaccine + CAF depletion + anti-PD-1 — zero disease-specific code c

Use Case

Patient

Key Finding Missed by Standard Workup

HGSOC (Stage IV)

PAT001

3 investigational paths: neoantigen vaccine (RMPEAAPPV IC50 7.8 nM), NNMT/CAF inhibition, convergent checkpoint blockade

ER+ Breast Cancer

PAT002