Uniprot MCP Server

Name: Uniprot MCP Server
Author: TakumiY235

by TakumiY235

MCP server for UniProt protein data access

14 14 tools GitHub

No known CVEs

MIT license

Actively maintained

Last commit 11d ago

Works with most clients

Transport: stdio, http

14 tools · ~450 tok

Grade A · 0.2% of 200K ctx

MCPpedia last refreshed this data 1d ago

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Uniprot MCP Server is an MCP server that MCP server for UniProt protein data access. Its tool list has not been published yet over stdio and http, requires no API key, and scores 73/100 on MCPpedia's security, maintenance and efficiency rubric.

Data Health

Step 1

Install in your client

Config is the same across clients - only the file and path differ.

Supported in Claude Desktopstdio, http · Node 18+

Paste into ~/Library/Application Support/Claude/claude_desktop_config.json

{
  "mcpServers": {
    "uniprot": {
      "args": [
        "--directory",
        "path/to/uniprot-mcp-server",
        "run",
        "uniprot-mcp-server"
      ],
      "command": "uv"
    }
  }
}

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What Uniprot Mcp Server does

A Model Context Protocol (MCP) server that provides access to UniProt protein information. This server allows AI assistants to fetch protein function and sequence information directly from UniProt.

Test This Server

No automated test available for this server. Check the GitHub README for setup instructions.

Scored, not listed

Why this score

Five weighted categories - click any category to see the underlying evidence.

Score breakdown

73/100across 5 weighted dimensions

How we score →

0255075100

−27

Security

Maintenance

Efficiency

Documentation

Compatibility

Categoriesclick a row to see evidence

Security

OSV.dev

No known CVEs.

No package registry to scan.

Inventory

Tools (14)

Click any tool to inspect its schema.

~450 tokens total

Community

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Frequently Asked Questions

Is Uniprot Mcp Server safe to use?: Uniprot Mcp Server has no known CVEs as of the latest MCPpedia security scan. Authentication requirements were not detected automatically - check the project's documentation before connecting in a shared environment. Licensed under MIT.
How do I install Uniprot Mcp Server?: Uniprot Mcp Server supports copy-paste install configs on its MCPpedia page for Claude Desktop, Cursor, and Claude Code. Scroll to the Quick Install section and select your client.
What can Uniprot Mcp Server do?: Uniprot Mcp Server provides 14 tools: get_protein_info, get_batch_protein_info, search_proteins, get_protein_features, accession and 9 more. See the full tools list on the server page for descriptions and parameters.
What AI clients work with Uniprot Mcp Server?: Uniprot Mcp Server is compatible with claude-desktop, cursor, claude-code. It uses stdio and http transport.
Is Uniprot Mcp Server actively maintained?: Uniprot Mcp Server is actively maintained - last commit was 11 days ago. It has 14 GitHub stars.

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MCP Security Weekly

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Community

Discussion

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Has anyone used this with Cursor?How do you handle auth?Any alternatives?

{ "mcpServers": { "uniprot": { "args": [ "--directory", "path/to/uniprot-mcp-server", "run", "uniprot-mcp-server" ], "command": "uv" } } }

Frequently Asked Questions

Is Uniprot Mcp Server safe to use?

Uniprot Mcp Server has no known CVEs as of the latest MCPpedia security scan. Authentication requirements were not detected automatically - check the project's documentation before connecting in a shared environment. Licensed under MIT.

How do I install Uniprot Mcp Server?

Uniprot Mcp Server supports copy-paste install configs on its MCPpedia page for Claude Desktop, Cursor, and Claude Code. Scroll to the Quick Install section and select your client.

What can Uniprot Mcp Server do?

Uniprot Mcp Server provides 14 tools: get_protein_info, get_batch_protein_info, search_proteins, get_protein_features, accession and 9 more. See the full tools list on the server page for descriptions and parameters.

What AI clients work with Uniprot Mcp Server?

Uniprot Mcp Server is compatible with claude-desktop, cursor, claude-code. It uses stdio and http transport.

Is Uniprot Mcp Server actively maintained?

Uniprot Mcp Server is actively maintained - last commit was 11 days ago. It has 14 GitHub stars.