Is io.github.yeyuan98/biomcp-ts safe to use?

io.github.yeyuan98/biomcp-ts has no known CVEs as of the latest MCPpedia security scan. Authentication requirements were not detected automatically - check the project's documentation before connecting in a shared environment. Licensed under Apache-2.0.

How do I install io.github.yeyuan98/biomcp-ts?

io.github.yeyuan98/biomcp-ts supports copy-paste install configs on its MCPpedia page for Claude Desktop, Cursor, and Claude Code. Scroll to the Quick Install section and select your client.

What AI clients work with io.github.yeyuan98/biomcp-ts?

io.github.yeyuan98/biomcp-ts is compatible with claude-desktop, cursor, claude-code. It uses stdio and sse transport.

Is io.github.yeyuan98/biomcp-ts actively maintained?

io.github.yeyuan98/biomcp-ts is actively maintained - last commit was 2 days ago. It has 12 GitHub stars.

io.github.yeyuan98/biomcp-ts

biomcp

Biomedical MCP server: genes, variants, trials, literature, patents, optional SQL/R/biowasm tools.

12 161/wk GitHub npm

No known CVEs

Apache-2.0 license

Actively maintained

Last commit 2d ago

Works with most clients

Transport: stdio, sse

0 tools

Grade F

MCPpedia last refreshed this data 2d ago

Edit this pageView history

io.github.yeyuan98/biomcp-ts is an MCP server that biomedical MCP server: genes, variants, trials, literature, patents, optional SQL/R/biowasm tools. Its tool list has not been published yet over stdio and sse, requires no API key, and scores 63/100 on MCPpedia's security, maintenance and efficiency rubric.

Health

Step 1

Install in your client

Config is the same across clients - only the file and path differ.

Supported in Claude Desktopstdio, sse · Node 18+

Paste into ~/Library/Application Support/Claude/claude_desktop_config.json

{
  "mcpServers": {
    "io-github-yeyuan98-biomcp-ts": {
      "args": [
        "-y",
        "biomcp"
      ],
      "command": "npx"
    }
  }
}

Are you the author?

Add this badge to your README to show your security score and help users find safe servers.

Embed in your READMEAbout badges →

[![MCPpedia Score](https://mcppedia.org/api/badge/io-github-yeyuan98-biomcp-ts)](https://mcppedia.org/s/io-github-yeyuan98-biomcp-ts)

Read me

What io.github.yeyuan98/biomcp-ts does

Biomedical MCP server: genes, variants, trials, literature, patents, optional SQL/R/biowasm tools.

Test This Server

This server supports HTTP transport. Be the first to test it - help the community know if it works.

Loading README…

Scored, not listed

Why this score

Five weighted categories - click any category to see the underlying evidence.

Score breakdown

63/100across 5 weighted dimensions

How we score →

0255075100

−37

Security

Maintenance

Efficiency

Documentation

Compatibility

Categoriesclick a row to see evidence

Security

OSV.dev

No known CVEs.

Checked biomcp against OSV.dev.

Community

Reviews

Be the first to review

Have you used this server?

Share your experience - it helps other developers decide.

How easy was setup?Did it work reliably?How was the documentation?

Frequently Asked Questions

Is io.github.yeyuan98/biomcp-ts safe to use?: io.github.yeyuan98/biomcp-ts has no known CVEs as of the latest MCPpedia security scan. Authentication requirements were not detected automatically - check the project's documentation before connecting in a shared environment. Licensed under Apache-2.0.
How do I install io.github.yeyuan98/biomcp-ts?: io.github.yeyuan98/biomcp-ts supports copy-paste install configs on its MCPpedia page for Claude Desktop, Cursor, and Claude Code. Scroll to the Quick Install section and select your client.
What AI clients work with io.github.yeyuan98/biomcp-ts?: io.github.yeyuan98/biomcp-ts is compatible with claude-desktop, cursor, claude-code. It uses stdio and sse transport.
Is io.github.yeyuan98/biomcp-ts actively maintained?: io.github.yeyuan98/biomcp-ts is actively maintained - last commit was 2 days ago. It has 12 GitHub stars.

Similar servers

Others in health

View all →

Clinicaltrialsgov Mcp Server91

MCP server for the ClinicalTrials.gov v2 API. Search trials, retrieve study details and results, and match patients to eligible trials.

Clinicaltrialsgov MCP Server91

Search ClinicalTrials.gov: find studies, retrieve results, match patients to candidate trials.

io.github.rosasynthesiz/flstudio-mcp90

Control FL Studio with Claude: in-DAW mixing, diagnosis, routing, and composition.

137 1

Fhir Mcp Server90

MCP server providing seamless access to FHIR APIs for AI tools and healthcare applications

137 3

MCP Security Weekly

Get CVE alerts and security updates for io.github.yeyuan98/biomcp-ts and similar servers.

Community

Discussion

Start a conversation

Ask a question, share a tip, or report an issue.

Has anyone used this with Cursor?How do you handle auth?Any alternatives?

Edit this pageView history

Health

Step 1

Install in your client

Config is the same across clients - only the file and path differ.

Supported in Claude Desktopstdio, sse · Node 18+

Paste into ~/Library/Application Support/Claude/claude_desktop_config.json

{
  "mcpServers": {
    "io-github-yeyuan98-biomcp-ts": {
      "args": [
        "-y",
        "biomcp"
      ],
      "command": "npx"
    }
  }
}

Are you the author?

Add this badge to your README to show your security score and help users find safe servers.

Embed in your READMEAbout badges →

[![MCPpedia Score](https://mcppedia.org/api/badge/io-github-yeyuan98-biomcp-ts)](https://mcppedia.org/s/io-github-yeyuan98-biomcp-ts)

Read me

What io.github.yeyuan98/biomcp-ts does

Biomedical MCP server: genes, variants, trials, literature, patents, optional SQL/R/biowasm tools.

Test This Server

This server supports HTTP transport. Be the first to test it - help the community know if it works.

README

BioMCP

Highlights

Democratizing agentic access to bioinformatics and biopharmaceutical databases and analyses.

Section-based federated access to 50+ bioinformatics, pharmaceutical, and patent databases
Optional toolboxes for local database curation and dependency-free analysis with Bioconductor and SAM/BED/BCFtools — no R installation, C toolchain, or containers
Concrete example vignettes, developed fully in the open

Install

npx -y biomcp doctor   # diagnose a machine: Node gate, config health, feature gates, peer deps
npx biomcp             # zero-config stdio MCP server (this is what MCP clients run); Node >= 22.13

Setup is guided in docs/AGENT-INSTALL.md — a one-minute start, copy-paste config entries for Claude Desktop, Claude Code, Codex, and OpenCode (one canonical pinned command covering every feature), biomcp doctor as the single troubleshooting entry point, and agent-friendly paths for API keys and optional features.

Multiple agents on one machine: biomcp enforces arXiv's Terms-of-Use rate limit (1 request / 3 s) per process. When running multiple biomcp MCP instances on one machine (e.g., one stdio instance per agent), rate limits are not coordinated across processes, and arXiv's TOU applies to all your machines in aggregate. For multi-agent single-machine deployments, run a single shared biomcp serve daemon (see docs/SELF-HOSTING.md) so all agents share one process and one global rate limiter.

Available Tools

Full tool schemas (params, enums, defaults) live in src/server/README.md.

Gene (7)

Tool	Description
`gene_search`	Search genes by symbol, name, or keyword with chromosome filter
`gene_get`	Get detailed gene info by HGNC symbol with optional sections (core, pathways, protein, ontology, go, interactions, expression, protein_atlas, constraint, druggability, dosage_sensitivity, clinical_evidence, disease_associations, diseases, funding). Set `smart=true` to auto-resolve gene aliases (e.g., "HER2" → "ERBB2")
`gene_diseases`	Get diseases associated with a gene (DisGeNET / OpenTargets)
`gene_drugs`	Find drugs targeting a gene (OpenTargets; envelope `{ results, warnings?, errors? }` — OpenTargets failures and unresolved genes ride in `errors[]`, never as inline rows)
`gene_trials`	Find clinical trials for a gene
`gene_articles`	Find articles about a gene (federated across PubMed, EuropePMC, Semantic Scholar, arXiv, PubTator, LitSense; envelope `{ results, warnings?, errors? }` — per-backend failures ride in `errors`)
`gene_enrich`	Pathway enrichment analysis for a gene list (Reactome)

Variant (4)

Tool	Description
`variant_search`	Search variants by rsid, HGVS, gene, ClinVar significance, frequency, CADD

... View full README on GitHub

Loading README…

Scored, not listed

Why this score

Five weighted categories - click any category to see the underlying evidence.

Score breakdown

63/100across 5 weighted dimensions

How we score →

0255075100

−37

Security

Maintenance

Efficiency

Documentation

Compatibility

Categoriesclick a row to see evidence

Security

OSV.dev

No known CVEs.

Checked biomcp against OSV.dev.

Community

Reviews

Be the first to review

Have you used this server?

Share your experience - it helps other developers decide.

How easy was setup?Did it work reliably?How was the documentation?

Frequently Asked Questions

Is io.github.yeyuan98/biomcp-ts safe to use?: io.github.yeyuan98/biomcp-ts has no known CVEs as of the latest MCPpedia security scan. Authentication requirements were not detected automatically - check the project's documentation before connecting in a shared environment. Licensed under Apache-2.0.
How do I install io.github.yeyuan98/biomcp-ts?: io.github.yeyuan98/biomcp-ts supports copy-paste install configs on its MCPpedia page for Claude Desktop, Cursor, and Claude Code. Scroll to the Quick Install section and select your client.
What AI clients work with io.github.yeyuan98/biomcp-ts?: io.github.yeyuan98/biomcp-ts is compatible with claude-desktop, cursor, claude-code. It uses stdio and sse transport.
Is io.github.yeyuan98/biomcp-ts actively maintained?: io.github.yeyuan98/biomcp-ts is actively maintained - last commit was 2 days ago. It has 12 GitHub stars.

Similar servers

Others in health

View all →

Clinicaltrialsgov Mcp Server91

MCP server for the ClinicalTrials.gov v2 API. Search trials, retrieve study details and results, and match patients to eligible trials.

Clinicaltrialsgov MCP Server91

Search ClinicalTrials.gov: find studies, retrieve results, match patients to candidate trials.

io.github.rosasynthesiz/flstudio-mcp90

Control FL Studio with Claude: in-DAW mixing, diagnosis, routing, and composition.

137 1

Fhir Mcp Server90

MCP server providing seamless access to FHIR APIs for AI tools and healthcare applications

137 3

MCP Security Weekly

Get CVE alerts and security updates for io.github.yeyuan98/biomcp-ts and similar servers.

Community

Discussion

Start a conversation

Ask a question, share a tip, or report an issue.

Has anyone used this with Cursor?How do you handle auth?Any alternatives?